Posts tagged: Chromosome

Oct 28 2008

Should we perform systematic electrophysiological study in myotonic dystrophy type 1?

Myotonic dystrophy type 1 (Steinert’s disease) is a multisystem disorder with autosomal dominant inheritance.
This disease is associated with the presence of an abnormal expansion of a cytosine thymine-guanine (CTG) trinucleotide repeat on chromosome 19q13.3. Because of rhythmic complications, the place for systematic electrophysiological study (EPS) has to be discussed.
Source: Biotechnology BioMed

Apr 12 2008

Autosomal mutations affecting Y chromosome loops in Drosophila melanogaster

Background:
The Y chromosome of Drosophila melanogaster harbors several genes required for male fertility. The genes for these fertility factors are very large in size and contain conspicuous amounts of repetitive DNA and transposons. Three of these loci (ks-1, kl-3 and kl-5) have the ability to develop giant lampbrush-like loops in primary spermatocytes, a cytological manifestation [...]

Apr 12 2008

Prognostic Impact of Array-based Genomic Profiles in Esophageal Squamous Cell Cancer

Background:
Esophageal squamous cell carcinoma (ESCC) is a genetically complex tumor type and a major cause of cancer related mortality. Although distinct genetic alterations have been linked to ESCC development and prognosis, the genetic alterations have not gained clinical applicability. We applied array-based comparative genomic hybridization (aCGH) to obtain a whole genome copy number profile relevant [...]

Apr 12 2008

The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference

Background:
Pseudogenes are an integral component of the human genome. Little attention, however, has so far been paid to the phenomenon that some pseudogenes are transcriptionally active. Recently, we demonstrated that the human ortholog of the rodent testis-specific ATP-binding cassette (ABC) transporter Abca17 is a ubiquitously transcribed pseudogene (ABCA17P). The aim of the present study was [...]

Apr 12 2008

Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria

Background:
Lineage-specific genes, the genes that are restricted to a limited subset of related organisms, may be important in adaptation. In parasitic organisms, lineage-specific gene products are possible targets for vaccine development or therapeutics when these genes are absent from the host genome.
Results:
In this study, we utilized comparative approaches based on a phylogenetic framework to characterize [...]

Apr 12 2008

Phylogenetic distribution of large-scale genome patchiness

Background:
The phylogenetic distribution of large-scale genome structure (i.e. mosaic compositional patchiness) has been explored mainly by analytical ultracentrifugation of bulk DNA. However, with the availability of large, good-quality chromosome sequences, and the recently developed computational methods to directly analyze patchiness on the genome sequence, an evolutionary comparative analysis can be carried out at the sequence [...]

Apr 12 2008

Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato

Background:
Tomato (Solanum lycopersicon) and potato (S. tuberosum) are two economically important crop species, the genomes of which are currently being sequenced. This study presents a first genome-wide analysis of these two species, based on two large collections of BAC end sequences representing approximately 19% of the tomato genome and 10% of the potato genome.
Results:
The tomato [...]

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